J3_8T8B_076

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8B_076 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.2074

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8B|1|1A|G|1055
8T8B|1|1A|G|1056
8T8B|1|1A|A|1057
*
8T8B|1|1A|U|1081
8T8B|1|1A|U|1082
8T8B|1|1A|U|1083
8T8B|1|1A|A|1084
8T8B|1|1A|A|1085
8T8B|1|1A|A|1086
8T8B|1|1A|G|1087
*
8T8B|1|1A|C|1102
8T8B|1|1A|A|1103
8T8B|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36