J3_8T8C_001

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8T8C|1|1A|G|686, 8T8C|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0267

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8T8C|1|1A|C|683
8T8C|1|1A|G|684
8T8C|1|1A|A|685
8T8C|1|1A|G|686
8T8C|1|1A|C|687
8T8C|1|1A|U|688
8T8C|1|1A|A|689
*
8T8C|1|1A|U|773
8T8C|1|1A|A|774
8T8C|1|1A|G|775
*
8T8C|1|1A|C|791
8T8C|1|1A|G|792
8T8C|1|1A|A|793
8T8C|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2