3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
8T8C|1|1a|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T8C_051 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.1029
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8T8C|1|1a|C|586
8T8C|1|1a|G|587
8T8C|1|1a|G|588
*
8T8C|1|1a|C|651
8T8C|1|1a|U|652
8T8C|1|1a|A|653
8T8C|1|1a|G|654
8T8C|1|1a|A|655
*
8T8C|1|1a|U|751
8T8C|1|1a|G|752
8T8C|1|1a|A|753
8T8C|1|1a|C|754
8T8C|1|1a|G|755

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1h
30S ribosomal protein S8
Chain 1l
30S ribosomal protein S12
Chain 1o
30S ribosomal protein S15
Chain 1q
30S ribosomal protein S17

Coloring options:


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