3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T8C_053 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0674
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

8T8C|1|1a|C|936
8T8C|1|1a|A|937
8T8C|1|1a|A|938
8T8C|1|1a|G|939
*
8T8C|1|1a|C|1344
8T8C|1|1a|U|1345
8T8C|1|1a|A|1346
8T8C|1|1a|G|1347
8T8C|1|1a|U|1348
8T8C|1|1a|A|1349
8T8C|1|1a|A|1350
*
8T8C|1|1a|U|1372
8T8C|1|1a|G|1373
8T8C|1|1a|A|1374
8T8C|1|1a|A|1375
8T8C|1|1a|U|1376
8T8C|1|1a|A|1377
8T8C|1|1a|C|1378
8T8C|1|1a|G|1379

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9

Coloring options:


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