J3_8T8C_058

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8T8C|1|2A|U|448, 8T8C|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_058 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0588

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8T8C|1|2A|C|32
8T8C|1|2A|U|33
8T8C|1|2A|C|34
8T8C|1|2A|G|35
*
8T8C|1|2A|C|445
8T8C|1|2A|G|446
8T8C|1|2A|A|447
8T8C|1|2A|U|448
8T8C|1|2A|A|449
8T8C|1|2A|G|450
8T8C|1|2A|C|451
8T8C|1|2A|G|452
8T8C|1|2A|C|453
8T8C|1|2A|A|454
8T8C|1|2A|C|455
8T8C|1|2A|C|456
8T8C|1|2A|A|457
8T8C|1|2A|G|458
8T8C|1|2A|U|459
8T8C|1|2A|A|460
8T8C|1|2A|C|461
*
8T8C|1|2A|G|468
8T8C|1|2A|G|469
8T8C|1|2A|A|470
8T8C|1|2A|A|471
8T8C|1|2A|A|472
8T8C|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23