J3_8T8C_061

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8T8C|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_061 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0736

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8T8C|1|2A|C|297
8T8C|1|2A|G|298
8T8C|1|2A|A|299
8T8C|1|2A|A|300
8T8C|1|2A|G|301
*
8T8C|1|2A|C|316
8T8C|1|2A|G|317
8T8C|1|2A|C|318
8T8C|1|2A|C|319
8T8C|1|2A|A|320
8T8C|1|2A|G|321
8T8C|1|2A|A|322
8T8C|1|2A|G|323
8T8C|1|2A|A|324
8T8C|1|2A|G|325
*
8T8C|1|2A|C|337
8T8C|1|2A|G|338
8T8C|1|2A|U|339
8T8C|1|2A|A|340
8T8C|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24