J3_8T8C_068

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

8T8C|1|2a|C|48, 8T8C|1|2a|A|50, 8T8C|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_068 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0655

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8T8C|1|2a|G|46
8T8C|1|2a|C|47
8T8C|1|2a|C|48
8T8C|1|2a|U|49
8T8C|1|2a|A|50
8T8C|1|2a|A|51
8T8C|1|2a|G|52
*
8T8C|1|2a|U|359
8T8C|1|2a|A|360
8T8C|1|2a|G|361
8T8C|1|2a|G|362
8T8C|1|2a|A|363
8T8C|1|2a|A|364
8T8C|1|2a|U|365
8T8C|1|2a|C|366
8T8C|1|2a|U|367
*
8T8C|1|2a|A|393
8T8C|1|2a|G|394
8T8C|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16