J3_8UD6_001

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8UD6|1|1A|G|686, 8UD6|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0307

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8UD6|1|1A|C|683
8UD6|1|1A|G|684
8UD6|1|1A|A|685
8UD6|1|1A|G|686
8UD6|1|1A|C|687
8UD6|1|1A|U|688
8UD6|1|1A|A|689
*
8UD6|1|1A|U|773
8UD6|1|1A|A|774
8UD6|1|1A|G|775
*
8UD6|1|1A|C|791
8UD6|1|1A|G|792
8UD6|1|1A|A|793
8UD6|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2