J3_8UD6_012
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UD6_012 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0553
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UD6|1|1a|C|936
8UD6|1|1a|A|937
8UD6|1|1a|A|938
8UD6|1|1a|G|939
*
8UD6|1|1a|C|1344
8UD6|1|1a|U|1345
8UD6|1|1a|A|1346
8UD6|1|1a|G|1347
8UD6|1|1a|U|1348
8UD6|1|1a|A|1349
8UD6|1|1a|A|1350
*
8UD6|1|1a|U|1372
8UD6|1|1a|G|1373
8UD6|1|1a|A|1374
8UD6|1|1a|A|1375
8UD6|1|1a|U|1376
8UD6|1|1a|A|1377
8UD6|1|1a|C|1378
8UD6|1|1a|G|1379
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1y
- Transfer RNA; tRNA
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