J3_8UD6_028

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0755

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8UD6|1|2a|C|936
8UD6|1|2a|A|937
8UD6|1|2a|A|938
8UD6|1|2a|G|939
*
8UD6|1|2a|C|1344
8UD6|1|2a|U|1345
8UD6|1|2a|A|1346
8UD6|1|2a|G|1347
8UD6|1|2a|U|1348
8UD6|1|2a|A|1349
8UD6|1|2a|A|1350
*
8UD6|1|2a|U|1372
8UD6|1|2a|G|1373
8UD6|1|2a|A|1374
8UD6|1|2a|A|1375
8UD6|1|2a|U|1376
8UD6|1|2a|A|1377
8UD6|1|2a|C|1378
8UD6|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA