J3_8UD6_038

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UD6|1|1A|U|448, 8UD6|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_038 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0429

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8UD6|1|1A|C|32
8UD6|1|1A|U|33
8UD6|1|1A|C|34
8UD6|1|1A|G|35
*
8UD6|1|1A|C|445
8UD6|1|1A|G|446
8UD6|1|1A|A|447
8UD6|1|1A|U|448
8UD6|1|1A|A|449
8UD6|1|1A|G|450
8UD6|1|1A|C|451
8UD6|1|1A|G|452
8UD6|1|1A|C|453
8UD6|1|1A|A|454
8UD6|1|1A|C|455
8UD6|1|1A|C|456
8UD6|1|1A|A|457
8UD6|1|1A|G|458
8UD6|1|1A|U|459
8UD6|1|1A|A|460
8UD6|1|1A|C|461
*
8UD6|1|1A|G|468
8UD6|1|1A|G|469
8UD6|1|1A|A|470
8UD6|1|1A|A|471
8UD6|1|1A|A|472
8UD6|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23