J3_8UD6_041
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 8UD6|1|1A|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UD6_041 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.05
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UD6|1|1A|C|297
8UD6|1|1A|G|298
8UD6|1|1A|A|299
8UD6|1|1A|A|300
8UD6|1|1A|G|301
*
8UD6|1|1A|C|316
8UD6|1|1A|G|317
8UD6|1|1A|C|318
8UD6|1|1A|C|319
8UD6|1|1A|A|320
8UD6|1|1A|G|321
8UD6|1|1A|A|322
8UD6|1|1A|G|323
8UD6|1|1A|A|324
8UD6|1|1A|G|325
*
8UD6|1|1A|C|337
8UD6|1|1A|G|338
8UD6|1|1A|U|339
8UD6|1|1A|A|340
8UD6|1|1A|G|341
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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