J3_8UD6_042

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

8UD6|1|1A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_042 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0678

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8UD6|1|1A|G|1344
8UD6|1|1A|C|1345
8UD6|1|1A|G|1346
8UD6|1|1A|G|1347
8UD6|1|1A|G|1348
8UD6|1|1A|A|1349
8UD6|1|1A|C|1350
*
8UD6|1|1A|G|1381
8UD6|1|1A|G|1382
8UD6|1|1A|C|1383
8UD6|1|1A|A|1384
8UD6|1|1A|G|1385
*
8UD6|1|1A|C|1402
8UD6|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23