J3_8UD7_020

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8UD7|1|2A|G|686, 8UD7|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD7_020 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0352

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8UD7|1|2A|C|683
8UD7|1|2A|G|684
8UD7|1|2A|A|685
8UD7|1|2A|G|686
8UD7|1|2A|C|687
8UD7|1|2A|U|688
8UD7|1|2A|A|689
*
8UD7|1|2A|U|773
8UD7|1|2A|A|774
8UD7|1|2A|G|775
*
8UD7|1|2A|C|791
8UD7|1|2A|G|792
8UD7|1|2A|A|793
8UD7|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2