J3_8UD7_043

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD7_043 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0566

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UD7|1|1A|G|1424
8UD7|1|1A|G|1425
8UD7|1|1A|G|1426
8UD7|1|1A|A|1427
8UD7|1|1A|C|1428
8UD7|1|1A|G|1429
*
8UD7|1|1A|C|1564
8UD7|1|1A|C|1565
*
8UD7|1|1A|G|1568
8UD7|1|1A|A|1569
8UD7|1|1A|A|1570
8UD7|1|1A|A|1571
8UD7|1|1A|A|1572
8UD7|1|1A|G|1573
8UD7|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2