J3_8UD8_014

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD8_014 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1535

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8UD8|1|1a|C|990
8UD8|1|1a|U|991
8UD8|1|1a|U|992
8UD8|1|1a|G|993
*
8UD8|1|1a|C|1045
8UD8|1|1a|A|1046
8UD8|1|1a|G|1047
*
8UD8|1|1a|C|1210
8UD8|1|1a|U|1211
8UD8|1|1a|U|1212
8UD8|1|1a|A|1213
8UD8|1|1a|C|1214
8UD8|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z