J3_8UD8_037

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UD8|1|1A|U|448, 8UD8|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD8_037 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0488

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8UD8|1|1A|C|32
8UD8|1|1A|U|33
8UD8|1|1A|C|34
8UD8|1|1A|G|35
*
8UD8|1|1A|C|445
8UD8|1|1A|G|446
8UD8|1|1A|A|447
8UD8|1|1A|U|448
8UD8|1|1A|A|449
8UD8|1|1A|G|450
8UD8|1|1A|C|451
8UD8|1|1A|G|452
8UD8|1|1A|C|453
8UD8|1|1A|A|454
8UD8|1|1A|C|455
8UD8|1|1A|C|456
8UD8|1|1A|A|457
8UD8|1|1A|G|458
8UD8|1|1A|U|459
8UD8|1|1A|A|460
8UD8|1|1A|C|461
*
8UD8|1|1A|G|468
8UD8|1|1A|G|469
8UD8|1|1A|A|470
8UD8|1|1A|A|471
8UD8|1|1A|A|472
8UD8|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23