J3_8UIY_019

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

8UIY|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UIY_019 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1376

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8UIY|1|L5|C|3937
8UIY|1|L5|G|3938
8UIY|1|L5|G|3939
*
8UIY|1|L5|C|4074
8UIY|1|L5|U|4075
8UIY|1|L5|G|4076
8UIY|1|L5|A|4077
8UIY|1|L5|C|4078
*
8UIY|1|L5|G|4168
8UIY|1|L5|G|4169
8UIY|1|L5|A|4170
8UIY|1|L5|C|4171
8UIY|1|L5|A|4172
8UIY|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15