J3_8UIZ_011
3D structure
- PDB id
- 8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UIZ_011 not in the Motif Atlas
- Homologous match to J3_8P9A_052
- Geometric discrepancy: 0.2633
- The information below is about J3_8P9A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.1
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UIZ|1|L5|G|1969
8UIZ|1|L5|A|1970
8UIZ|1|L5|C|1971
*
8UIZ|1|L5|G|1995
8UIZ|1|L5|C|1996
8UIZ|1|L5|U|1997
8UIZ|1|L5|A|1998
8UIZ|1|L5|A|1999
8UIZ|1|L5|G|2000
8UIZ|1|L5|G|2001
*
8UIZ|1|L5|C|2016
8UIZ|1|L5|A|2017
8UIZ|1|L5|C|2018
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ls
- 60S acidic ribosomal protein P0
- Chain Lt
- Large ribosomal subunit protein uL11
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