3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CGG*CUGAC*GGACAG
Length
14 nucleotides
Bulged bases
8UIZ|1|L5|G|4076
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UIZ_019 not in the Motif Atlas
Geometric match to J3_5J7L_044
Geometric discrepancy: 0.1317
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn 3-way junction
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8UIZ|1|L5|C|3937
8UIZ|1|L5|G|3938
8UIZ|1|L5|G|3939
*
8UIZ|1|L5|C|4074
8UIZ|1|L5|U|4075
8UIZ|1|L5|G|4076
8UIZ|1|L5|A|4077
8UIZ|1|L5|C|4078
*
8UIZ|1|L5|G|4168
8UIZ|1|L5|G|4169
8UIZ|1|L5|A|4170
8UIZ|1|L5|C|4171
8UIZ|1|L5|A|4172
8UIZ|1|L5|G|4173

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LG
60S ribosomal protein L7a
Chain LN
60S ribosomal protein L15

Coloring options:


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