J3_8UIZ_028

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UIZ_028 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.0718

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UIZ|1|S2|A|40
8UIZ|1|S2|G|41
*
8UIZ|1|S2|C|481
8UIZ|1|S2|G|482
8UIZ|1|S2|C|483
8UIZ|1|S2|A|484
8UIZ|1|S2|A|485
8UIZ|1|S2|A|486
8UIZ|1|S2|U|487
*
8UIZ|1|S2|A|512
8UIZ|1|S2|G|513
8UIZ|1|S2|U|514

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23