J3_8UJ9_016

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJ9_016 not in the Motif Atlas

Homologous match to J3_8P9A_087

Geometric discrepancy: 0.2479

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8UJ9|1|L5|U|2575
8UJ9|1|L5|G|2576
*
8UJ9|1|L5|C|2585
8UJ9|1|L5|G|2586
8UJ9|1|L5|A|2587
8UJ9|1|L5|C|2588
8UJ9|1|L5|C|2589
*
8UJ9|1|L5|G|2756
8UJ9|1|L5|A|2757

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34