J3_8UJ9_022

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8UJ9|1|L5|A|4464, 8UJ9|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJ9_022 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.1112

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UJ9|1|L5|U|4463
8UJ9|1|L5|A|4464
8UJ9|1|L5|U|4465
8UJ9|1|L5|C|4466
*
8UJ9|1|L5|G|4491
8UJ9|1|L5|U|4492
8UJ9|1|L5|U|4493
*
8UJ9|1|L5|A|4507
8UJ9|1|L5|C|4508
8UJ9|1|L5|U|4509
8UJ9|1|L5|A|4510
8UJ9|1|L5|A|4511
8UJ9|1|L5|U|4512
8UJ9|1|L5|A|4513

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23