3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
8UJ9|1|S2|A|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJ9_028 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.0901
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_63856.1
Basepair signature
cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8UJ9|1|S2|A|40
8UJ9|1|S2|G|41
8UJ9|1|S2|A|42
8UJ9|1|S2|U|43
8UJ9|1|S2|U|44
8UJ9|1|S2|A|45
8UJ9|1|S2|A|46
8UJ9|1|S2|G|47
*
8UJ9|1|S2|C|479
8UJ9|1|S2|G|480
8UJ9|1|S2|C|481
8UJ9|1|S2|G|482
8UJ9|1|S2|C|483
8UJ9|1|S2|A|484
8UJ9|1|S2|A|485
8UJ9|1|S2|A|486
8UJ9|1|S2|U|487
*
8UJ9|1|S2|A|512
8UJ9|1|S2|G|513
8UJ9|1|S2|U|514

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23

Coloring options:


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