3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CUUAAUUU*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
8UJ9|1|S2|G|1256, 8UJ9|1|S2|A|1258, 8UJ9|1|S2|A|1260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJ9_036 not in the Motif Atlas
Homologous match to J3_8CRE_080
Geometric discrepancy: 0.0858
The information below is about J3_8CRE_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_88451.1
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8UJ9|1|S2|C|1237
8UJ9|1|S2|U|1238
8UJ9|1|S2|U|1239
8UJ9|1|S2|A|1240
8UJ9|1|S2|A|1241
8UJ9|1|S2|U|1242
8UJ9|1|S2|U|1243
8UJ9|1|S2|U|1244
*
8UJ9|1|S2|G|1255
8UJ9|1|S2|G|1256
8UJ9|1|S2|G|1257
8UJ9|1|S2|A|1258
8UJ9|1|S2|A|1259
8UJ9|1|S2|A|1260
8UJ9|1|S2|C|1261
8UJ9|1|S2|C|1262
8UJ9|1|S2|U|1263
8UJ9|1|S2|C|1264
8UJ9|1|S2|A|1265
8UJ9|1|S2|C|1266
*
8UJ9|1|S2|G|1516
8UJ9|1|S2|G|1517
8UJ9|1|S2|C|1518
8UJ9|1|S2|U|1519
8UJ9|1|S2|G|1520

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SP
Small ribosomal subunit protein uS19
Chain SS
40S ribosomal protein S18
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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