J3_8UJB_023
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8UJB|1|L5|A|4464, 8UJB|1|L5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UJB_023 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0755
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UJB|1|L5|U|4463
8UJB|1|L5|A|4464
8UJB|1|L5|U|4465
8UJB|1|L5|C|4466
*
8UJB|1|L5|G|4491
8UJB|1|L5|U|4492
8UJB|1|L5|U|4493
*
8UJB|1|L5|A|4507
8UJB|1|L5|C|4508
8UJB|1|L5|U|4509
8UJB|1|L5|A|4510
8UJB|1|L5|A|4511
8UJB|1|L5|U|4512
8UJB|1|L5|A|4513
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LO
- 60S ribosomal protein L13a
- Chain LV
- 60S ribosomal protein L23
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