J3_8UJC_011

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJC_011 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2387

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8UJC|1|L5|G|1969
8UJC|1|L5|A|1970
8UJC|1|L5|C|1971
*
8UJC|1|L5|G|1995
8UJC|1|L5|C|1996
8UJC|1|L5|U|1997
8UJC|1|L5|A|1998
8UJC|1|L5|A|1999
8UJC|1|L5|G|2000
8UJC|1|L5|G|2001
*
8UJC|1|L5|C|2016
8UJC|1|L5|A|2017
8UJC|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains