J3_8UJD_019

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

8UJD|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJD_019 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1347

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8UJD|1|L5|C|3937
8UJD|1|L5|G|3938
8UJD|1|L5|G|3939
*
8UJD|1|L5|C|4074
8UJD|1|L5|U|4075
8UJD|1|L5|G|4076
8UJD|1|L5|A|4077
8UJD|1|L5|C|4078
*
8UJD|1|L5|G|4168
8UJD|1|L5|G|4169
8UJD|1|L5|A|4170
8UJD|1|L5|C|4171
8UJD|1|L5|A|4172
8UJD|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15