J3_8UJJ_007

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8UJJ|1|L5|A|1534, 8UJJ|1|L5|G|1641, 8UJJ|1|L5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJJ_007 not in the Motif Atlas

Homologous match to J3_8P9A_049

Geometric discrepancy: 0.0655

The information below is about J3_8P9A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

8UJJ|1|L5|U|1531
8UJJ|1|L5|G|1532
8UJJ|1|L5|A|1533
8UJJ|1|L5|A|1534
8UJJ|1|L5|C|1535
8UJJ|1|L5|U|1536
8UJJ|1|L5|A|1537
*
8UJJ|1|L5|U|1622
8UJJ|1|L5|A|1623
8UJJ|1|L5|G|1624
*
8UJJ|1|L5|C|1640
8UJJ|1|L5|G|1641
8UJJ|1|L5|A|1642
8UJJ|1|L5|A|1643

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37