J3_8P9A_049

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|A|817, 8P9A|1|AR|G|924, 8P9A|1|AR|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|U|814
8P9A|1|AR|G|815
8P9A|1|AR|A|816
8P9A|1|AR|A|817
8P9A|1|AR|C|818
8P9A|1|AR|U|819
8P9A|1|AR|A|820
*
8P9A|1|AR|U|905
8P9A|1|AR|A|906
8P9A|1|AR|G|907
*
8P9A|1|AR|C|923
8P9A|1|AR|G|924
8P9A|1|AR|A|925
8P9A|1|AR|A|926

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CP

60S ribosomal protein L15-A

Chain DL

60S ribosomal protein L37-A

Chain DN

60S ribosomal protein L39