J3_8UJJ_010

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

8UJJ|1|L5|U|1997, 8UJJ|1|L5|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJJ_010 not in the Motif Atlas

Homologous match to J3_8CRE_012

Geometric discrepancy: 0.5028

The information below is about J3_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8UJJ|1|L5|G|1969
8UJJ|1|L5|A|1970
8UJJ|1|L5|C|1971
*
8UJJ|1|L5|G|1995
8UJJ|1|L5|C|1996
8UJJ|1|L5|U|1997
8UJJ|1|L5|A|1998
8UJJ|1|L5|A|1999
8UJJ|1|L5|G|2000
8UJJ|1|L5|G|2001
*
8UJJ|1|L5|C|2016
8UJJ|1|L5|A|2017
8UJJ|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11