J3_8UJJ_035
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8UJJ|1|S2|G|1256, 8UJJ|1|S2|A|1258, 8UJJ|1|S2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UJJ_035 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.1087
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UJJ|1|S2|C|1237
8UJJ|1|S2|U|1238
8UJJ|1|S2|U|1239
8UJJ|1|S2|A|1240
8UJJ|1|S2|A|1241
8UJJ|1|S2|U|1242
8UJJ|1|S2|U|1243
8UJJ|1|S2|U|1244
*
8UJJ|1|S2|G|1255
8UJJ|1|S2|G|1256
8UJJ|1|S2|G|1257
8UJJ|1|S2|A|1258
8UJJ|1|S2|A|1259
8UJJ|1|S2|A|1260
8UJJ|1|S2|C|1261
8UJJ|1|S2|C|1262
8UJJ|1|S2|U|1263
8UJJ|1|S2|C|1264
8UJJ|1|S2|A|1265
8UJJ|1|S2|C|1266
*
8UJJ|1|S2|G|1516
8UJJ|1|S2|G|1517
8UJJ|1|S2|C|1518
8UJJ|1|S2|U|1519
8UJJ|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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