J3_8UKB_015

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

8UKB|1|L5|C|2470, 8UKB|1|L5|A|2472, 8UKB|1|L5|G|2475, 8UKB|1|L5|G|2503, 8UKB|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UKB_015 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5933

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8UKB|1|L5|A|2451
8UKB|1|L5|G|2452
8UKB|1|L5|A|2453
8UKB|1|L5|U|2454
8UKB|1|L5|G|2455
8UKB|1|L5|G|2456
*
8UKB|1|L5|C|2465
8UKB|1|L5|G|2466
8UKB|1|L5|U|2467
8UKB|1|L5|U|2468
8UKB|1|L5|C|2469
8UKB|1|L5|C|2470
8UKB|1|L5|G|2471
8UKB|1|L5|A|2472
8UKB|1|L5|A|2473
8UKB|1|L5|G|2474
8UKB|1|L5|G|2475
8UKB|1|L5|G|2476
*
8UKB|1|L5|C|2501
8UKB|1|L5|G|2502
8UKB|1|L5|G|2503
8UKB|1|L5|C|2504
8UKB|1|L5|C|2505
8UKB|1|L5|G|2506
8UKB|1|L5|A|2507
8UKB|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37