J3_8UKB_018

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UKB_018 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1565

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8UKB|1|L5|A|2598
8UKB|1|L5|G|2599
8UKB|1|L5|A|2600
8UKB|1|L5|A|2601
8UKB|1|L5|G|2602
*
8UKB|1|L5|C|2737
8UKB|1|L5|C|2738
*
8UKB|1|L5|G|2742
8UKB|1|L5|A|2743
8UKB|1|L5|A|2744
8UKB|1|L5|A|2745
8UKB|1|L5|A|2746
8UKB|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a