J3_8UPO_006

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

8UPO|1|D|U|1025

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPO|1|D|G|1003
8UPO|1|D|A|1004
8UPO|1|D|A|1005
8UPO|1|D|G|1006
*
8UPO|1|D|U|1023
8UPO|1|D|G|1024
8UPO|1|D|U|1025
8UPO|1|D|G|1026
8UPO|1|D|C|1027
8UPO|1|D|C|1028
*
8UPO|1|D|G|1033
8UPO|1|D|G|1034
8UPO|1|D|A|1035
8UPO|1|D|A|1036
8UPO|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14