J3_8UPR_002

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPR_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0704

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

8UPR|1|D|C|936
8UPR|1|D|A|937
8UPR|1|D|A|938
8UPR|1|D|G|939
*
8UPR|1|D|C|1344
8UPR|1|D|U|1345
8UPR|1|D|A|1346
8UPR|1|D|G|1347
8UPR|1|D|U|1348
8UPR|1|D|A|1349
8UPR|1|D|A|1350
*
8UPR|1|D|U|1372
8UPR|1|D|G|1373
8UPR|1|D|A|1374
8UPR|1|D|A|1375
8UPR|1|D|U|1376
8UPR|1|D|A|1377
8UPR|1|D|C|1378
8UPR|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9