J3_8UPR_033

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8UPR|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPR_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0503

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8UPR|1|a|G|297
8UPR|1|a|G|298
8UPR|1|a|A|299
8UPR|1|a|A|300
8UPR|1|a|G|301
*
8UPR|1|a|C|316
8UPR|1|a|G|317
8UPR|1|a|C|318
8UPR|1|a|G|319
8UPR|1|a|A|320
8UPR|1|a|U|321
8UPR|1|a|A|322
8UPR|1|a|C|323
8UPR|1|a|A|324
8UPR|1|a|G|325
*
8UPR|1|a|C|337
8UPR|1|a|G|338
8UPR|1|a|U|339
8UPR|1|a|A|340
8UPR|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4