J3_8UQM_006

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

8UQM|1|D|U|1025

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQM|1|D|G|1003
8UQM|1|D|A|1004
8UQM|1|D|A|1005
8UQM|1|D|G|1006
*
8UQM|1|D|U|1023
8UQM|1|D|G|1024
8UQM|1|D|U|1025
8UQM|1|D|G|1026
8UQM|1|D|C|1027
8UQM|1|D|C|1028
*
8UQM|1|D|G|1033
8UQM|1|D|G|1034
8UQM|1|D|A|1035
8UQM|1|D|A|1036
8UQM|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AE

DNA-directed RNA polymerase subunit beta'

Chain S

30S ribosomal protein S14