J3_8UQM_011

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQM_011 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0616

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8UQM|1|a|C|698
8UQM|1|a|A|699
8UQM|1|a|G|700
*
8UQM|1|a|C|732
8UQM|1|a|G|733
8UQM|1|a|A|734
8UQM|1|a|A|735
8UQM|1|a|C|736
*
8UQM|1|a|G|760
8UQM|1|a|A|761
8UQM|1|a|U|762
8UQM|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2