J3_8UQM_027
3D structure
- PDB id
- 8UQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UQM_027 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.159
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UQM|1|D|U|1073
8UQM|1|D|G|1074
*
8UQM|1|D|U|1083
8UQM|1|D|G|1084
8UQM|1|D|U|1085
8UQM|1|D|U|1086
8UQM|1|D|G|1087
*
8UQM|1|D|C|1098
8UQM|1|D|G|1099
8UQM|1|D|C|1100
8UQM|1|D|A|1101
8UQM|1|D|A|1102
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain AG
- Transcription termination/antitermination protein NusA
- Chain F
- 30S ribosomal protein S21
- Chain G
- 30S ribosomal protein S2
- Chain K
- 30S ribosomal protein S5
Coloring options: