J3_8UQP_009

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8UQP|1|D|U|1240, 8UQP|1|D|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQP_009 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1228

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8UQP|1|D|C|1237
8UQP|1|D|A|1238
8UQP|1|D|A|1239
8UQP|1|D|U|1240
8UQP|1|D|G|1241
*
8UQP|1|D|C|1296
8UQP|1|D|G|1297
8UQP|1|D|U|1298
8UQP|1|D|A|1299
8UQP|1|D|G|1300
8UQP|1|D|U|1301
8UQP|1|D|C|1302
8UQP|1|D|C|1303
*
8UQP|1|D|G|1334
8UQP|1|D|U|1335
8UQP|1|D|C|1336
8UQP|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13