J3_8UR0_026

3D structure

PDB id

8UR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8UR0|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UR0_026 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1275

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8UR0|1|D|C|990
8UR0|1|D|U|991
8UR0|1|D|U|992
8UR0|1|D|G|993
8UR0|1|D|A|994
8UR0|1|D|C|995
8UR0|1|D|A|996
8UR0|1|D|U|997
*
8UR0|1|D|A|1044
8UR0|1|D|C|1045
8UR0|1|D|A|1046
8UR0|1|D|G|1047
*
8UR0|1|D|C|1210
8UR0|1|D|U|1211
8UR0|1|D|U|1212
8UR0|1|D|A|1213
8UR0|1|D|C|1214
8UR0|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14