8UR0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UR0_001 | No text annotation | ||
| HL_8UR0_002 | tRNA anticodon loop | ||
| HL_8UR0_003 | No text annotation | ||
| HL_8UR0_004 | No text annotation | ||
| HL_8UR0_005 | tRNA anticodon loop | ||
| HL_8UR0_006 | No text annotation | ||
| HL_8UR0_007 | No text annotation | ||
| HL_8UR0_008 | No text annotation | ||
| HL_8UR0_009 | GNRA | ||
| HL_8UR0_010 | GNRA | ||
| HL_8UR0_110 | No text annotation | ||
| HL_8UR0_011 | UNCG | ||
| HL_8UR0_012 | GNRA related | ||
| HL_8UR0_013 | GNRA | ||
| HL_8UR0_014 | No text annotation | ||
| HL_8UR0_015 | UNCG | ||
| HL_8UR0_016 | GNRA | ||
| HL_8UR0_017 | UNCG | ||
| HL_8UR0_018 | GNRA wlth extra near cWW | ||
| HL_8UR0_019 | tRNA D-loop | ||
| HL_8UR0_020 | GNRA-like with tWH | ||
| HL_8UR0_021 | No text annotation | ||
| HL_8UR0_022 | GNRA | ||
| HL_8UR0_023 | No text annotation | ||
| HL_8UR0_024 | No text annotation | ||
| HL_8UR0_025 | GNRA | ||
| HL_8UR0_026 | GNRA | ||
| HL_8UR0_027 | No text annotation | ||
| HL_8UR0_028 | GNRA | ||
| HL_8UR0_029 | No text annotation | ||
| HL_8UR0_030 | GNRA | ||
| HL_8UR0_031 | T-loop related | ||
| HL_8UR0_111 | No text annotation | ||
| HL_8UR0_032 | No text annotation | ||
| HL_8UR0_033 | GNRA | ||
| HL_8UR0_034 | GNRA | ||
| HL_8UR0_035 | T-loop with 3 stacked bulged bases | ||
| HL_8UR0_036 | No text annotation | ||
| HL_8UR0_037 | UNCG | ||
| HL_8UR0_038 | GNRA | ||
| HL_8UR0_039 | No text annotation | ||
| HL_8UR0_040 | No text annotation | ||
| HL_8UR0_041 | No text annotation | ||
| HL_8UR0_042 | UNCG | ||
| HL_8UR0_043 | No text annotation | ||
| HL_8UR0_044 | No text annotation | ||
| HL_8UR0_045 | No text annotation | ||
| HL_8UR0_046 | No text annotation | ||
| HL_8UR0_047 | T-loop with 2 stacked bulged bases | ||
| HL_8UR0_048 | No text annotation | ||
| HL_8UR0_049 | T-loop with unstacked turn | ||
| HL_8UR0_050 | No text annotation | ||
| HL_8UR0_051 | Pseudoknot geometry | ||
| HL_8UR0_052 | GNRA | ||
| HL_8UR0_053 | GNRA | ||
| HL_8UR0_054 | No text annotation | ||
| HL_8UR0_055 | T-loop with 2 stacked bulged bases | ||
| HL_8UR0_056 | No text annotation | ||
| HL_8UR0_057 | GNRA | ||
| HL_8UR0_058 | No text annotation | ||
| HL_8UR0_059 | GNRA wlth tandem sheared | ||
| HL_8UR0_060 | No text annotation | ||
| HL_8UR0_061 | No text annotation | ||
| HL_8UR0_062 | No text annotation | ||
| HL_8UR0_112 | No text annotation | ||
| HL_8UR0_063 | No text annotation | ||
| HL_8UR0_064 | No text annotation | ||
| HL_8UR0_065 | No text annotation | ||
| HL_8UR0_066 | No text annotation | ||
| HL_8UR0_067 | GNRA wlth tandem sheared | ||
| HL_8UR0_068 | No text annotation | ||
| HL_8UR0_069 | GNRA | ||
| HL_8UR0_070 | T-loop with 2 stacked bulged bases | ||
| HL_8UR0_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8UR0_072 | GNRA | ||
| HL_8UR0_073 | No text annotation | ||
| HL_8UR0_074 | Mini UNCG with extended bulge | ||
| HL_8UR0_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8UR0_076 | UNCG | ||
| HL_8UR0_077 | Mini UNCG | ||
| HL_8UR0_078 | No text annotation | ||
| HL_8UR0_079 | GNRA | ||
| HL_8UR0_080 | UNCG | ||
| HL_8UR0_113 | No text annotation | ||
| HL_8UR0_081 | No text annotation | ||
| HL_8UR0_082 | No text annotation | ||
| HL_8UR0_083 | No text annotation | ||
| HL_8UR0_084 | GNRA related | ||
| HL_8UR0_085 | GNRA variation | ||
| HL_8UR0_086 | No text annotation | ||
| HL_8UR0_087 | No text annotation | ||
| HL_8UR0_088 | No text annotation | ||
| HL_8UR0_089 | No text annotation | ||
| HL_8UR0_090 | No text annotation | ||
| HL_8UR0_091 | No text annotation | ||
| HL_8UR0_092 | No text annotation | ||
| HL_8UR0_093 | No text annotation | ||
| HL_8UR0_116 | No text annotation | ||
| HL_8UR0_094 | Pseudoknot geometry | ||
| HL_8UR0_095 | GNRA | ||
| HL_8UR0_096 | GNRA | ||
| HL_8UR0_097 | No text annotation | ||
| HL_8UR0_098 | No text annotation | ||
| HL_8UR0_099 | GNRA variation | ||
| HL_8UR0_100 | No text annotation | ||
| HL_8UR0_101 | GNRA | ||
| HL_8UR0_102 | GNRA | ||
| HL_8UR0_103 | Ribsomal LSU H95 | ||
| HL_8UR0_104 | No text annotation | ||
| HL_8UR0_105 | No text annotation | ||
| HL_8UR0_114 | UNCG variation | ||
| HL_8UR0_106 | No text annotation | ||
| HL_8UR0_107 | GNRA | ||
| HL_8UR0_115 | No text annotation | ||
| HL_8UR0_108 | No text annotation | ||
| HL_8UR0_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UR0_193 | No text annotation | ||
| IL_8UR0_194 | No text annotation | ||
| IL_8UR0_195 | No text annotation | ||
| IL_8UR0_196 | No text annotation | ||
| IL_8UR0_197 | No text annotation | ||
| IL_8UR0_198 | No text annotation | ||
| IL_8UR0_001 | Single bulged G | ||
| IL_8UR0_002 | Single bulged A | ||
| IL_8UR0_003 | No text annotation | ||
| IL_8UR0_004 | Minor groove platform | ||
| IL_8UR0_005 | Multiple bulged bases | ||
| IL_8UR0_006 | Minor groove platform with extra cWW | ||
| IL_8UR0_007 | Minor groove platform | ||
| IL_8UR0_199 | Single bulged G | ||
| IL_8UR0_008 | Single bulged G, near cWW | ||
| IL_8UR0_009 | Isolated non-canonical cWW pair | ||
| IL_8UR0_010 | Minor groove platform related | ||
| IL_8UR0_011 | Isolated cWH basepair | ||
| IL_8UR0_200 | No text annotation | ||
| IL_8UR0_012 | tWH-tWH-tHW-tHW | ||
| IL_8UR0_013 | No text annotation | ||
| IL_8UR0_014 | Kink-turn with non-sequential stacking | ||
| IL_8UR0_015 | No text annotation | ||
| IL_8UR0_016 | C-loop | ||
| IL_8UR0_017 | Single bulged U | ||
| IL_8UR0_018 | C-loop | ||
| IL_8UR0_019 | Single bulged G | ||
| IL_8UR0_020 | No text annotation | ||
| IL_8UR0_021 | No text annotation | ||
| IL_8UR0_022 | tSH-tHW-tWW | ||
| IL_8UR0_023 | No text annotation | ||
| IL_8UR0_024 | SSU/LSU pseudoknot | ||
| IL_8UR0_025 | Kink-turn related | ||
| IL_8UR0_026 | No text annotation | ||
| IL_8UR0_027 | tSH-tHW-tHS | ||
| IL_8UR0_028 | Major groove platform | ||
| IL_8UR0_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8UR0_030 | No text annotation | ||
| IL_8UR0_031 | Major groove platform; stack outside cWW | ||
| IL_8UR0_032 | Single stack bend | ||
| IL_8UR0_033 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_201 | Triple non-canonical cWW pairs | ||
| IL_8UR0_034 | No text annotation | ||
| IL_8UR0_035 | Kink-turn | ||
| IL_8UR0_036 | Left turn | ||
| IL_8UR0_037 | tSH-tHW-tHS | ||
| IL_8UR0_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8UR0_039 | Single bulged A | ||
| IL_8UR0_040 | Single bulged G | ||
| IL_8UR0_041 | Minor groove platform | ||
| IL_8UR0_042 | No text annotation | ||
| IL_8UR0_043 | Minor groove platform | ||
| IL_8UR0_208 | Single stack bend | ||
| IL_8UR0_044 | No text annotation | ||
| IL_8UR0_202 | No text annotation | ||
| IL_8UR0_045 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_046 | Single bulged U | ||
| IL_8UR0_047 | Stack and bulge | ||
| IL_8UR0_048 | Isolated cWS basepair | ||
| IL_8UR0_049 | Minor groove platform | ||
| IL_8UR0_050 | Single bulged A | ||
| IL_8UR0_051 | Isolated non-canonical cWW pair | ||
| IL_8UR0_052 | No text annotation | ||
| IL_8UR0_053 | Minor groove platform | ||
| IL_8UR0_054 | No text annotation | ||
| IL_8UR0_055 | No text annotation | ||
| IL_8UR0_056 | 180 degree turn | ||
| IL_8UR0_057 | Double sheared with non-canonical cWW | ||
| IL_8UR0_058 | No text annotation | ||
| IL_8UR0_059 | No text annotation | ||
| IL_8UR0_060 | No text annotation | ||
| IL_8UR0_061 | Partly complementary | ||
| IL_8UR0_062 | Isolated non-canonical cWW pair | ||
| IL_8UR0_063 | Double sheared | ||
| IL_8UR0_064 | Triple sheared related | ||
| IL_8UR0_065 | Single bulged A | ||
| IL_8UR0_066 | No text annotation | ||
| IL_8UR0_067 | Triple sheared with non-canonical cWW | ||
| IL_8UR0_068 | Single bulged A | ||
| IL_8UR0_069 | Minor groove platform | ||
| IL_8UR0_070 | No text annotation | ||
| IL_8UR0_071 | Single stack bend | ||
| IL_8UR0_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UR0_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8UR0_074 | No text annotation | ||
| IL_8UR0_075 | No text annotation | ||
| IL_8UR0_076 | No text annotation | ||
| IL_8UR0_077 | No text annotation | ||
| IL_8UR0_078 | Double sheared | ||
| IL_8UR0_079 | Isolated non-canonical cWW pair | ||
| IL_8UR0_080 | AAA cross-strand stack | ||
| IL_8UR0_081 | No text annotation | ||
| IL_8UR0_082 | tHW-tHW cross-strand stack | ||
| IL_8UR0_083 | Single bulged A | ||
| IL_8UR0_084 | Single bulged G | ||
| IL_8UR0_085 | Triple sheared | ||
| IL_8UR0_086 | Major groove platform | ||
| IL_8UR0_087 | Multiple bulged bases | ||
| IL_8UR0_088 | Single stack bend | ||
| IL_8UR0_089 | 90 degree turn | ||
| IL_8UR0_203 | No text annotation | ||
| IL_8UR0_090 | Stack outside cWW | ||
| IL_8UR0_091 | Single stack bend | ||
| IL_8UR0_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8UR0_093 | Single bulged G | ||
| IL_8UR0_094 | C-loop with bulged stacked A's | ||
| IL_8UR0_095 | Isolated non-canonical cWW pair | ||
| IL_8UR0_096 | Double sheared with non-canonical cWW | ||
| IL_8UR0_204 | No text annotation | ||
| IL_8UR0_209 | Single bulged A | ||
| IL_8UR0_097 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_098 | Single stack bend | ||
| IL_8UR0_099 | Single bulged C | ||
| IL_8UR0_100 | UAA/GAN | ||
| IL_8UR0_101 | SSU/LSU pseudoknot | ||
| IL_8UR0_102 | Single bulged U | ||
| IL_8UR0_103 | Kink-turn related | ||
| IL_8UR0_104 | No text annotation | ||
| IL_8UR0_105 | Isolated non-canonical cWW pair | ||
| IL_8UR0_106 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_210 | No text annotation | ||
| IL_8UR0_107 | No text annotation | ||
| IL_8UR0_108 | No text annotation | ||
| IL_8UR0_109 | Major groove platform | ||
| IL_8UR0_110 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_111 | Isolated cWS basepair | ||
| IL_8UR0_112 | No text annotation | ||
| IL_8UR0_113 | Kink-turn | ||
| IL_8UR0_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UR0_115 | Major groove platform; stack outside cWW | ||
| IL_8UR0_116 | C-loop | ||
| IL_8UR0_117 | UAA/GAN | ||
| IL_8UR0_118 | tSH-tHW-tHS | ||
| IL_8UR0_119 | No text annotation | ||
| IL_8UR0_120 | Single stack bend | ||
| IL_8UR0_121 | Single stack bend | ||
| IL_8UR0_205 | No text annotation | ||
| IL_8UR0_122 | No text annotation | ||
| IL_8UR0_123 | UAA/GAN | ||
| IL_8UR0_124 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_125 | tSH-tHW | ||
| IL_8UR0_126 | Single bulged U | ||
| IL_8UR0_127 | No text annotation | ||
| IL_8UR0_128 | tSH-tHW-tHS | ||
| IL_8UR0_129 | 180 degree turn | ||
| IL_8UR0_130 | Single bulged A | ||
| IL_8UR0_131 | UAA/GAN variation | ||
| IL_8UR0_132 | No text annotation | ||
| IL_8UR0_133 | Isolated tWW turn | ||
| IL_8UR0_134 | Major groove platform; stack outside cWW | ||
| IL_8UR0_206 | No text annotation | ||
| IL_8UR0_135 | Intercalated tWH | ||
| IL_8UR0_136 | tSH-tSH-tHH-tHS | ||
| IL_8UR0_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8UR0_138 | Triple sheared | ||
| IL_8UR0_139 | Single bulged C | ||
| IL_8UR0_140 | Single bulged A | ||
| IL_8UR0_141 | Kink-turn related | ||
| IL_8UR0_142 | Minor groove platform, major groove intercalation | ||
| IL_8UR0_143 | Major groove intercalation | ||
| IL_8UR0_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8UR0_207 | No text annotation | ||
| IL_8UR0_145 | UAA/GAN related | ||
| IL_8UR0_146 | Intercalated cWW | ||
| IL_8UR0_147 | Bulged stacked bases | ||
| IL_8UR0_148 | No text annotation | ||
| IL_8UR0_149 | Major groove platform | ||
| IL_8UR0_150 | No text annotation | ||
| IL_8UR0_151 | No text annotation | ||
| IL_8UR0_152 | No text annotation | ||
| IL_8UR0_153 | Minor groove platform | ||
| IL_8UR0_154 | Isolated tHS basepair with bulges | ||
| IL_8UR0_155 | Isolated non-canonical cWW pair | ||
| IL_8UR0_156 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_157 | Isolated cWH basepair | ||
| IL_8UR0_158 | Isolated non-canonical cWW pair | ||
| IL_8UR0_159 | Tandem non-canonical cWW pairs | ||
| IL_8UR0_160 | Isolated non-canonical cWW pair | ||
| IL_8UR0_161 | Isolated non-canonical cWW pair | ||
| IL_8UR0_162 | No text annotation | ||
| IL_8UR0_163 | Isolated non-canonical cWW pair | ||
| IL_8UR0_164 | Kink-turn | ||
| IL_8UR0_165 | Single bulged U | ||
| IL_8UR0_166 | Double sheared | ||
| IL_8UR0_167 | No text annotation | ||
| IL_8UR0_168 | No text annotation | ||
| IL_8UR0_169 | No text annotation | ||
| IL_8UR0_170 | Major groove minor groove platform with extra cWW | ||
| IL_8UR0_171 | Double sheared with non-canonical cWW | ||
| IL_8UR0_172 | No text annotation | ||
| IL_8UR0_173 | Isolated non-canonical cWW with bulges | ||
| IL_8UR0_174 | No text annotation | ||
| IL_8UR0_175 | Major groove platform with intercalation | ||
| IL_8UR0_176 | No text annotation | ||
| IL_8UR0_177 | Single bulged A | ||
| IL_8UR0_178 | tSH-tHS-tHW | ||
| IL_8UR0_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8UR0_180 | C-loop | ||
| IL_8UR0_181 | UAA/GAN related, with intercalation | ||
| IL_8UR0_182 | Multiple bulged bases | ||
| IL_8UR0_183 | UAA/GAN with extra cWW | ||
| IL_8UR0_184 | No text annotation | ||
| IL_8UR0_185 | Major groove intercalation | ||
| IL_8UR0_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8UR0_187 | tHS double platform | ||
| IL_8UR0_188 | Major groove intercalation | ||
| IL_8UR0_189 | No text annotation | ||
| IL_8UR0_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8UR0_191 | Symmetric double minor groove platform | ||
| IL_8UR0_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8UR0_020 | No text annotation | ||
| J3_8UR0_021 | No text annotation | ||
| J3_8UR0_022 | No text annotation | ||
| J3_8UR0_023 | No text annotation | ||
| J3_8UR0_024 | No text annotation | ||
| J3_8UR0_001 | No text annotation | ||
| J3_8UR0_002 | No text annotation | ||
| J3_8UR0_003 | No text annotation | ||
| J3_8UR0_025 | No text annotation | ||
| J3_8UR0_004 | No text annotation | ||
| J3_8UR0_005 | No text annotation | ||
| J3_8UR0_026 | No text annotation | ||
| J3_8UR0_006 | No text annotation | ||
| J3_8UR0_007 | No text annotation | ||
| J3_8UR0_027 | No text annotation | ||
| J3_8UR0_008 | No text annotation | ||
| J3_8UR0_028 | No text annotation | ||
| J3_8UR0_009 | No text annotation | ||
| J3_8UR0_029 | No text annotation | ||
| J3_8UR0_030 | No text annotation | ||
| J3_8UR0_031 | No text annotation | ||
| J3_8UR0_032 | No text annotation | ||
| J3_8UR0_033 | No text annotation | ||
| J3_8UR0_010 | No text annotation | ||
| J3_8UR0_011 | No text annotation | ||
| J3_8UR0_012 | No text annotation | ||
| J3_8UR0_013 | No text annotation | ||
| J3_8UR0_014 | No text annotation | ||
| J3_8UR0_034 | No text annotation | ||
| J3_8UR0_035 | No text annotation | ||
| J3_8UR0_015 | Kink-turn 3-way junction | ||
| J3_8UR0_036 | No text annotation | ||
| J3_8UR0_016 | No text annotation | ||
| J3_8UR0_017 | No text annotation | ||
| J3_8UR0_037 | No text annotation | ||
| J3_8UR0_018 | No text annotation | ||
| J3_8UR0_019 | No text annotation | ||
| J4_8UR0_001 | tRNA junction | ||
| J4_8UR0_002 | tRNA junction | ||
| J4_8UR0_003 | No text annotation | ||
| J4_8UR0_004 | No text annotation | ||
| J4_8UR0_005 | No text annotation | ||
| J4_8UR0_006 | No text annotation | ||
| J4_8UR0_007 | No text annotation | ||
| J4_8UR0_008 | No text annotation | ||
| J4_8UR0_009 | No text annotation | ||
| J4_8UR0_010 | No text annotation | ||
| J4_8UR0_011 | No text annotation | ||
| J4_8UR0_012 | No text annotation | ||
| J4_8UR0_013 | No text annotation | ||
| J4_8UR0_014 | No text annotation | ||
| J4_8UR0_015 | No text annotation | ||
| J5_8UR0_001 | No text annotation | ||
| J5_8UR0_002 | No text annotation | ||
| J5_8UR0_003 | No text annotation | ||
| J5_8UR0_004 | No text annotation | ||
| J5_8UR0_005 | No text annotation | ||
| J5_8UR0_006 | No text annotation | ||
| J5_8UR0_007 | No text annotation | ||
| J6_8UR0_001 | No text annotation | ||
| J7_8UR0_001 | No text annotation | ||
| J7_8UR0_002 | No text annotation |
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