J3_8URH_017
3D structure
- PDB id
- 8URH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8URH|1|a|A|2518
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8URH_017 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0638
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8URH|1|a|C|2517
8URH|1|a|A|2518
8URH|1|a|U|2519
8URH|1|a|C|2520
*
8URH|1|a|G|2545
8URH|1|a|U|2546
8URH|1|a|A|2547
*
8URH|1|a|U|2561
8URH|1|a|U|2562
8URH|1|a|U|2563
8URH|1|a|A|2564
8URH|1|a|A|2565
8URH|1|a|A|2566
8URH|1|a|G|2567
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain t
- 50S ribosomal protein L14
Coloring options: