J3_8URH_033

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8URH|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URH_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0502

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8URH|1|a|G|297
8URH|1|a|G|298
8URH|1|a|A|299
8URH|1|a|A|300
8URH|1|a|G|301
*
8URH|1|a|C|316
8URH|1|a|G|317
8URH|1|a|C|318
8URH|1|a|G|319
8URH|1|a|A|320
8URH|1|a|U|321
8URH|1|a|A|322
8URH|1|a|C|323
8URH|1|a|A|324
8URH|1|a|G|325
*
8URH|1|a|C|337
8URH|1|a|G|338
8URH|1|a|U|339
8URH|1|a|A|340
8URH|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4