J3_8URI_006

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

8URI|1|D|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URI|1|D|G|1003
8URI|1|D|A|1004
8URI|1|D|A|1005
8URI|1|D|G|1006
*
8URI|1|D|U|1023
8URI|1|D|G|1024
8URI|1|D|U|1025
8URI|1|D|G|1026
8URI|1|D|C|1027
8URI|1|D|C|1028
*
8URI|1|D|G|1033
8URI|1|D|G|1034
8URI|1|D|A|1035
8URI|1|D|A|1036
8URI|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AE

DNA-directed RNA polymerase subunit beta'

Chain S

30S ribosomal protein S14