J3_8URI_011

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URI_011 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0616

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8URI|1|a|C|698
8URI|1|a|A|699
8URI|1|a|G|700
*
8URI|1|a|C|732
8URI|1|a|G|733
8URI|1|a|A|734
8URI|1|a|A|735
8URI|1|a|C|736
*
8URI|1|a|G|760
8URI|1|a|A|761
8URI|1|a|U|762
8URI|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2