J3_8URI_025
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8URI_025 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1127
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8URI|1|D|U|943
8URI|1|D|G|944
8URI|1|D|G|945
8URI|1|D|A|946
*
8URI|1|D|U|1235
8URI|1|D|A|1236
8URI|1|D|C|1237
*
8URI|1|D|G|1337
8URI|1|D|G|1338
8URI|1|D|A|1339
8URI|1|D|A|1340
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
- Chain O
- 30S ribosomal protein S9
- Chain X
- 30S ribosomal protein S13
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