J3_8URI_026

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8URI|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URI_026 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1274

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8URI|1|D|C|990
8URI|1|D|U|991
8URI|1|D|U|992
8URI|1|D|G|993
8URI|1|D|A|994
8URI|1|D|C|995
8URI|1|D|A|996
8URI|1|D|U|997
*
8URI|1|D|A|1044
8URI|1|D|C|1045
8URI|1|D|A|1046
8URI|1|D|G|1047
*
8URI|1|D|C|1210
8URI|1|D|U|1211
8URI|1|D|U|1212
8URI|1|D|A|1213
8URI|1|D|C|1214
8URI|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14