J3_8URM_001

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URM_001 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0859

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8URM|1|1|G|30
8URM|1|1|C|31
*
8URM|1|1|G|474
8URM|1|1|C|475
8URM|1|1|G|476
8URM|1|1|A|477
8URM|1|1|A|478
8URM|1|1|A|479
8URM|1|1|A|480
8URM|1|1|G|481
*
8URM|1|1|C|509
8URM|1|1|C|510

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24